# Display bundle of structures as "sausage" # (spline with variable radius). # store current selection DefPropMol 'prev_sel' 'selected' DefPropRes 'prev_sel' 'selected' DefPropAtom 'prev_sel' 'selected' # calculate mean structure, setting B-factor of atoms in # mean structure to average displacement MeanMol "mean" avg_disp mean_only # unset helix and sheet properties for all residues in # mean structure, we want to add a simple spline, not a # schematic display of secondary structure SelectRes 'mol.name = "mean"' DefPropRes 'helix' '0' DefPropRes 'sheet' '0' # select CA atoms of mean structure SelectAtom 'mol.name = "mean" & name = "CA"' # set atom radius (which will be used as spline radius) # to the B-factor, which was calculated as average # displacement to the mean structure RadiusAtom bfactor # add the spline AddRibbon # use atom radius as spline radius StyleRibbon as_is as_is as_is atom # restore old selection, with newly created spline added SelectMol 'prev_sel | name = "mean"' SelectRes 'prev_sel | mol.name = "mean"' SelectAtom 'prev_sel | mol.name = "mean"'